2011

  • Adhikari ND, Froehlich JE, Strand DD, Buck SM, Kramer DM, Larkin RM (2011) GUN4-Porphyrin Complexes Bind the ChlH/GUN5 Subunit of Mg-Chelatase and Promote Chlorophyll Biosynthesis in Arabidopsis. Plant Cell  23: 1449-1467.

  • Ajjawi I, Coku A, Yang Y, Froehlich JE, Osteryoung KW, Benning C, Last R (2011) A J-like protein influences fatty acid composition of chloroplast lipids in Arabidopsis. PLoS 6(10):e25368.

  • Aung K and Hu J (2011) The Arabidopsis tail-anchored protein PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1 is involved in the morphogenesis and proliferation of peroxisomes and mitochondria. Plant Cell 23: 4446-4461.

  • Awad S, Chen J. Inferring transcription factor-target interaction types in gene regulatory networks (Poster), 1st annual Engineering Graduate Research Symposium, East Lansing, MI 48824, November 3, 2011.

  • Banerjee, G., S. Car, J. S. Scott-Craig, D. B. Hodge, and J. D. Walton (2011) Alkaline peroxide pretreatment of corn stover: effects of biomass, peroxide, and enzyme loading and composition on yields of glucose and xylose. Biotechnol. Biofuels 4:16.

  • Blankenship RE, Tiede DM, Barber J, Brudvig GW, Fleming G, Ghirardi M, Gunner MR, Junge W, Kramer DM, Melis A, Moore TA, Moser CC, Nocera DG, Nozik AJ, Ort DR, Parson WW, Prince RC, Sayre RT (2011) Comparing photosynthetic and photovoltaic efficiencies and recognizing the potential for improvement. Science 332(6031): 805-809 Abstract

  • Brandizzi F, Mullen R. (2011) Organelle biogenesis and communication in plant cells. Plant Cell Rep. 2011 30:135-136

  • Carvallo M, Pino M-T, Jeknic Z, Zou C,  Doherty C, Shiu S-H, Chen THH,  Thomashow MF (2011) A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance—Solanum commersonii, Solanum tuberosum and Arabidopsis thaliana. J Experimental Botany 62: 3807-3819.

  • Champigny MJ, Shearer H, Mohammad A, Haines K, Neumann M, Thilmony R, He SY, Fobert P, Dengler N, Cameron RK (2011) Localization of DIR1 at the tissue, cellular and subcellular levels during systemic acquired resistance in Arabidopsis using DIR1:GUS and DIR1:EGFP reporters. BMC Plant Biology 11:125 Abstract

  • Chen J, Stefano G, Brandizzi F, Zheng H (2011) Arabidopsis RHD3 mediates the generation of the tubular ER network and is required for Golgi distribution and motility in plant cells. J Cell Sci 124: 2241-2252 Abstract

  • Conger R, Chen Y, Fornaciari S, Faso C, Held M, Brandizzi F (2011) Evidence for the involvement of the Arabidopsis SEC24A in male transmission J. Exp. Bot. 62: 4917-4926

  • Costigan, SE*, Warnasooriya, SN*, Humphries, BA, Montgomery, BL (2011). Root-localized phytochrome chromophore synthesis is required for photoregulation of root elongation and impacts root sensitivity to jasmonic acid in Arabidopsis thaliana. Plant Physiol, 157: doi:10.1104/pp.111.184689 Abstract (*authors contributed equally)

  • Dong MA, Farré EM, Thomashow MF (2011) CIRCADIAN CLOCK-ASSOCIATED and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis. Proc. Natl. Acad. Sci. USA 108: 7241-7246.

  • Ducat D, Sachdeva, G, Silver, P (2011) Rewiring Hydrogenase-Dependent Redox Circuits in Cyanobacteria. PNAS. Mar 8;108(10):3941-6.

  • Ducat D, Way J, Silver, P (2011). Engineering cyanobacteria to generate high-value products. Trends Biotech. Feb;29(2):95-103.  

  • Froehlich JE (2011) Studying Arabidopsis envelope protein localization and topology using thermolysin and trypsin proteases; (book chapter/review) In  Methods in Molecular  Biology: Chloroplast Research in Arabidopsis: Methods and Protocols, Ed. Paul Jarvis, Humana Press, New York, New York (USA), pp. 351-367.

  • Froehlich JE, Keegstra K  (2011) The role of the transmembrane domain in determining the targeting of integral membrane proteins to either the inner envelope or thylakoid membrane. Plant J 68:844-856.

  • Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, ..., He SY, ... et al. (2011) Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. J Bacteriol 193: 2076-2077 Abstract

  • Gonzales-Vigil E, Bianchetti CM, Phillips GN Jr, Howe GA (2011) Adaptive evolution of threonine deaminase in plant defense against insect herbivores. Proc Natl Acad Sci USA 2011 Apr 5; 108(14): 5897-902. Epub 2011 Mar 21 Abstract

  • Held M, Danhof L, Brandizzi F (2011) Identifying protein-protein interactions in Arabidopsis by co-immunoprecipitation of GFP-tagged proteins and proteomic detection. Methods Mol Biol, in press

  • Held MA, Be E, Zemelis S, Withers S, Wilkerson C, Brandizzi F (2011) CGR3: A Golgi-localized protein influencing homogalacturonan methylesterification. Mol Plant 4: 832-844

  • Hu J (2011) Plant cell and signaling biology blooms in the Wuyi mountain. Mol Plant 4: 557-561.

  • Hu L, Liang W, Yin C, Cui X, Zong J, Wang X, Hu J, and Zhang D (2011). Rice MADS3 regulates ROS homeostasis during late anther development. Plant Cell 23: 515-533 Full Text

  • Hu P, Collings C, Chen J, Thomashow M (2011) Global regulation of Arabidopsis genes involved in photosynthesis (Poster), MSU-DOE Plant Research Review. East Lansing, MI 48824, July 21, 2011.

  • Kaur N and Hu J (2011) Defining the plant peroxisomal proteome: from Arabidopsis to rice. Front. Plant Sci. 2:103. doi: 10.3389/fpls.2011.00103 Abstract

  • Koo AJ, Cooke TF, Howe GA (2011) Cytochrome P450 CYP94B3 mediates catabolism and inactivation of the plant hormone jasmonoyl-L-isoleucine. Proc Natl Acad Sci USA 2011 May 31; 108(22): 9298-303. Epub 2011 May 16 Abstract

  • Kramer DM, Evans JR (2011) The importance of energy balance in improving photosynthetic productivity. Plant Phys 155: 70-78. AbstractAbstract

  • Lechno-Yossef S, Fan Q, Wojciuch E, Wolk CP (2011) Identification of ten Anabaena sp. genes that under aerobic conditions are required for growth on dinitrogen but not for growth on fixed nitrogen. J Bacteriol 193: 3482-3489.

  • Liu J, Wolk CP (2011) Mutations in genes patA and patL of Anabaena sp. strain PCC 7120 result in similar phenotypes, and the proteins encoded by those genes may interact. J Bacteriol 193: 6070-6074.

  • Mecey C, Hauck P, Trapp M, Pumplin N, Plovanich A, and He SY (2011) A critical role of STAYGREEN /Mendel’s I locus in disease symptom development during Pseudomonas syringae pv. tomato infection of Arabidopsis. Plant Physiol 157: 1965-1974. Abstract

  • Nomura K, Mecey C, Lee YN, Imboden L, Chang, J, He SY (2011) Effector-triggered immunity blocks pathogen degradation of an immunity-associated vesicle traffic regulator in Arabidopsis. Proc Natl Acad Sci USA 108(26): 10774-10779 Abstract

  • Oh, S, Montgomery, BL (2011). Identification of proteins associated with spatial-specific phytochrome-mediated light signaling in Arabidopsis thaliana by liquid chromatography-tandem mass spectrometry. Gravit Space Biol, in press.

  • Pan R, Hu J (2011). The conserved fission complex on peroxisomes and mitochondria. Plant Signal & Behav 6(6): 870-872.

  • Pattanaik, B*, Whitaker, MJ*, Montgomery, BL (2011). Regulation of phycoerythrin synthesis and cellular morphology in Fremyella diplosiphon green mutants. Biochem Biophys Res Commun, doi:10.1016/j.bbrc.2011.08.051 Abstract (*authors contributed equally)

  • Rott M, Martins NF, Thiele W, Lein W, Bock R, Kramer DM, Schottler MA (2011) ATP synthase repression in tobacco restricts photosynthetic electron transport, CO2 assimilation, and plant growth by overacidification of the thylakoid lumen. Plant Cell 23(1): 304-321. Abstract

  • Scott-Craig, J. S., M. S. Borrusch, G. Banerjee, C. M. Harvey, and J. D. Walton (2011) Biochemical and molecular characterization of secreted -xylosidase from Aspergillus niger. J. Biol. Chem. 286:42848-42854.

  • Singh, SP, Montgomery, BL. (2011) Temporal responses of wild-type pigmentation and RcaE-deficient strains of Fremyella diplosiphon during light transitions. Commun Integr Biol 4(5): 503-510 Abstract

  • Slabaugh E, Brandizzi F (2011) Membrane-tethered transcription factors provide a connection between stress response and developmental pathways. Plant Signal Behav 6: 1210-1211

  • Slabaugh E, Held M, Brandizzi F (2011) Control of root hair development in Arabidopsis thaliana by an endoplasmic reticulum anchored member of the R2R3-MYB transcription factor family. Plant J 67: 395-405

  • Stefano G, Renna L, Moss TJ, McNew JA, Brandizzi F (2011) In Arabidopsis, the spatial and dynamic organization of the endoplasmic reticulum and Golgi apparatus largely relies on a non-essential GTPase, RHD3. Plant J Mar;69(6):957-66. doi: 10.1111/j.1365-313X.2011.04846.x. Epub 2011 Dec 19. Abstract

  • Tian M, Win J, Savory E, Burkhardt A, Held M, Brandizzi F, Day B. (2011) 454 Genome Sequencing of Pseudoperonospora cubensis Reveals Effector Proteins with a QXLR Translocation Motif. Mol Plant Microbe Interact. 2011 May;24(5):543-53

  • Walton, J., G. Banerjee, and S. Car (2011) GENPLAT: an automated platform for biomass enzyme discovery and cocktail optimization. J. Vis. Exp. doi: 10.3791/3314.

  • Warnasooriya, SN, Porter, KJ, Montgomery, BL (2011). Tissue- and isoform-specific phytochrome regulation of light-dependent anthocyanin accumulation in Arabidopsis thaliana. Plant Signal Behav 6(5): 624-631 Abstract

  • Whitaker, MJ, Pattanaik, B, Montgomery, BL (2011). Characterization of green mutants in Fremyella diplosiphon provides insight into the impact of phycoerythrin deficiency and linker function on complementary chromatic adaptation. Biochem Biophys Res Commun 404(1): 52-56 Abstract

  • Yang Y, Tammy L. Sage TL, Liu Y, Ahmad T, Shiu S, Froehlich JE, Imre KM,  Osteryoung KW (2011) CLUMPED CHLOROPLASTS 1 encodes a novel protein required for plastid separation in Arabidopsis.  Proc Natl Acad Sci USA 108:18530-18535.

  • Zeng W, Brutus A, Kremer JM, Withers JC, Gao X, Jones D, and He SY (2011) A genetic screen reveals Arabidopsis stomatal and/or apoplastic defenses against Pseudomonas syringae pv. tomato DC3000. PLoS Pathogens 7(10): e1002291. Abstract

  • Zhang Z, Zhang Y, Tan H, Wang Y, Li G, Liang W, Yuan Z, Hu J, Ren H, and Zhang D (2011). RICE MORPHOLOGY DETERMINANT encodes the type II formin FH5 and regulates rice morphogenesis. Plant Cell 23: 681-700          

  • Zou C, Sun K, Mackaluso JD, Seddon AE, Jin R, Thomashow MF, Shiu SH (2011) Cis-regulatory code of stress responsive transcription in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 108: 14992-14997.