2014

  • Agostoni M, Montgomery BL (2014) Survival Strategies in the Aquatic and Terrestrial World: The Impact of Second Messengers on Cyanobacterial Processes. Life (Basel). Review. PMID: 25411927. Abstract.

  • Appel A, Bocarsly A, Bercaw J, Dobbek H, Dupuis M, DuBois DJ, Ferry JG, Fujita E, Hille R, Kenis PJA, Kerfeld CA, Morris R, Peden C, Portis A, Ragsdale S, RauchfussTB, Reek JNH, Seefeldt L, Thauer R, Waldrop G (2014) Frontiers, Opportunities, and Challenges in Biochemical and Chemical Catalysis of CO2. Chemical Reviews. In press.

  • Armbruster U, Carrillo LR, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry JA, Kramer DM, Jonikas MC (2014) Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nat Commun. PMID: 25451040. Abstract. 

  • Aung K, Kaur N, and Hu J (2014) Dynamin-related proteins in peroxisome division. In Molecular machines involved in peroxisome biogenesis and maintenance, eds Cecile Brocard and Andreas Hartig, Springer-Verlag Wien. pp439-460 (doi 10.1007/978-3-7091-1788-0_20).

  • Axen SD, Erbilgin O, Kerfeld CA (2014) A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method. PLoS Comput Biol. PMID: 25340524.

  • Barajas D, Xu K, de Castro Martin IF, Sasvari Z, Brandizzi F, Risco C, Nagy PD (2014) Co-opted Oxysterol-Binding ORP and VAP Proteins Channel Sterols to RNA Virus Replication Sites via Membrane Contact Sites. PLoS Pathog. PMID: 25329172

  • Brandizzi F, Frigerio L, Howell SH, Schäfer P (2014) Endoplasmic reticulum-shape and function in stress translation. Front Plant Sci. PMID: 25225498. Abstract. 

  • Cai Q, Yuan Z, Chen M, Yin C, Luo Z, Zhao X, Liang W, Hu J, Zhang D (2014) Jasmonic acid regulates spikelet development in rice. Nat Commun 19: 3476. doi: 10.1038/ncomms4476.

  • Cameron JC,Sutter M and Kerfeld CA (2014) The Carboxysome: Function, Structure and Cellular Dynamics. In The Cell Biology of Cyanobacteria. Elsevier, eds. Enrique Flores and Antonia Herrero. In press.

  • Campos ML, Kang JH, Howe GA (2014) Jasmonate-triggered plant immunity. J Chem Ecol. PMID: 24973116

  • Cao H, Walton JD, Brumm P, Phillips GN Jr. (2014) Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum. J Biol Chem. PMID: 25086049

  • Cassin-Ross G, Hu J (2014) A simple assay to identify peroxisomal proteins involved in 12-oxo-phytodienoic acid metabolism. Plant Signal Behav. PMID: 25763626. Abstract.

  • Cassin-Ross G, and Hu J (2014) A simple assay to identify peroxisomal proteins involved in 12-oxo-phytodienoic acid metabolism. Plant Signal & Behav. 9:e29464; PMID: 24905580

  • Cassin-Ross G, and Hu J (2014) Systematic phenotypic screen of Arabidopsis peroxisomal mutants identifies proteins involved in beta-oxidation. Plant Physiol DOI:10.1104/pp.114.250183.

  • Desai M, Kaur N, and Hu J (2014) Ectopic expression of the RING domain of the Arabidopsis PEROXIN2 protein partially suppresses the phenotype of the photomorphogenic mutant de-etiolated1. PLOS ONE 9:e108473; doi: 10.1371/journal.pone.0108473.

  • Erbilgin O, McDonald K and Kerfeld CA (2014) Characterization of a Planctomycetal Organelle: A Novel Bacterial Microcompartment for the Aerobic Degradation of Plant  Saccharides. Applied and Environmental Microbiology. In press. 

  • Gaudana SB, Zarzycki J, Moparthi VK, Kerfeld CA (2014) Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase uptake by cyanobacteria. Photosynth Res. PMID: 2539905. Abstract. 

  • Huot B, Yao J, Montgomery BL, He SY (2014) Growth-defense Tradeoffs in Plants: A Balancing Act to Optimize Fitness. Molecular Plant, doi: 10.1093/mp/ssu049. Abstract.

  • Jallet D, Thurotte A, Leverenz RLL, Perreau F, Kerfeld CA and Kirilovsky D (2014) Specificity of the cyanobacterial Orange Carotenoid Protein: Influences of OCP and phycobilisome structures. Plant Physiology. In press. 

  • Jiao Y, Chen L and Chen J (2014) Data Acquisition and Preprocessing on Three Dimensional Medical Images. (Li X and Ng SK Eds.) Biological Data Mining and its Applications in Healthcare, World Scientific. ISBN: 978-981-4551-00-7. Chapter.

  • Jones AM, Lalonde S, Ho CH, Xu M, Wang RS, Xuan Y, You CH, Sardi MI, Parsa SA, Smith-Valle E, Su T, Frazer KA, Pilot G, Pratelli R, Grossmann G, Acharya BR, Hu HC, Engineer C, Villiers F, Ju C, Takeda K, Su Z, Dong Q, Assmann SM, Chen J, Kwak JM, Schroeder JI, Albert R, Rhee SY and Frommer WB (2014) Border Control – A Membrane-linked Interactome of Arabidopsis. Science, in press. 

  • Juergens MT, Deshpande R, Lucker BF, Park JJ, Wang H, Gargouri M, Holguin FO, Disbrow B, Schaub T, Skepper JN, Kramer DM, Gang DR, Hicks LM, Shachar-Hill Y (2014) The Regulation of Photosynthetic Structure and Function During Nitrogen Deprivation in Chlamydomonas reinhardtii. Plant Physiol. PMID: 25489023. Abstract.

  • Karkehabadi S, Helmich KE, Kaper T, Hansson H, Mikkelsen NE, Gudmundsson M, Piens K, Fujdala M, Banerjee G, Scott-Craig JS, Walton JD, Phillips GN Jr, Sandgren M (2014) Biochemical characterization and crystal structures of a fungal family 3 β-glucosidase, Cel3A from Hypocrea jecorina. J Biol Chem. PMID: 25164811. Abstract. 

  • Kaur N, Cross L, Theodoulou F, Baker A, and Hu J (2014), Plant peroxisomes: protein import, dynamics, and metabolite transport, in The Plant Sciences Vol. Cell Biology, Springer. In press.

  • Kerfeld CA and Kirilovsky D (2014) Structure, Function and Evolution of OCP-based Photoprotection in Cyanobacteria. Genomics of Cyanobacteria, eds., Franck Chauvat and Corrine Cassier-Chauvat. In press.

  • Kerfeld CA, Erbilgin O (2014) Bacterial microcompartments and the modular construction of microbial metabolism. Trends Microbiol. PMID: 25455419. Abstract. 

  • Kim S, Zemelis S, Keegstra K, Brandizzi F (2014) The cytoplasmic localization of the catalytic site of CSLF6 supports a channeling model for the biosynthesis of mixed-linkage glucan. Plant J. PMID: 25557048. Abstract.

  • Koo AJ, Thireault C, Zemelis S, Poudel AN, Zhang T, Kitaoka N, Brandizzi F, Matsuura H, Howe GA (2014) Endoplasmic Reticulum-Associated Inactivation of the Hormone Jasmonoyl-L-Isoleucine by Multiple Members of the Cytochrome P450 94 Family in Arabidopsis. J Biol Chem. PMID: 25210037

  • Lai YS, Stefano G, Brandizzi F (2014) ER stress signaling requires RHD3, a functionally conserved ER-shaping GTPase. J Cell Sci. PMID: 24876222

  • Leverenz RL, Jallet D, Li M, Mathies RA, Kirilovsky D and Kerfeld CA (2014) Structural and Functional Modularity of the Orange Carotenoid Protein: Distinct Roles for the N- and C-terminal Domains in Cyanobacterial Photoprotection. The Plant Cell. In press.

  • Li G, Liang W, Zhang X, Ren H, Hu J, Bennett MJ, Zhang D (2014) Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth. Proc Natl Acad Sci U S A. PMID: 24982173

  • Luo H, Hong SY, Sgambelluri RM, Angelos E, Li X, Walton JD (2014) Peptide Macrocyclization Catalyzed by a Prolyl Oligopeptidase Involved in α-Amanitin Biosynthesis. Chem Biol. PMID: 25484237. Abstract.

  • Macho AP, Schwessinger B, Ntoukakis V, Brutus A, Segonzac C, Roy S,  Kadota Y, Oh M-H, Sklenar J, Derbyshire P, Lozano-Durán R, Malinovsky FG, Monaghan J, Menke FL, Huber SC, He SY, Zipfel C (2014) A Bacterial Tyrosine Phosphatase Inhibits Plant Pattern Recognition Receptor Activation. Science. DOI: 10.1126/science.1248849. 

  • Maneta-Peyret L, Lai YS, Stefano G, Fouillen L. Brandizzi F, Moreau P (2014) Phospholipid biosynthesis increases in RHD3-defective mutants. Plant Signal Behav. PMID: 25019619

  • Matzke NJ, Shih PM and Kerfeld CA (2014) Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer. PLOS|ONE. In press. 

  • Montgomery BL (2014) The Regulation of Light Sensing and Light Harvesting Impacts the Use of Cyanobacteria as Biotechnology Platforms. Frontiers in Bioengineering and Biotechnology 2:22. doi: 10.3389/fbioe.2014.00022. Abstract

  • Montgomery BL (2014) The Regulation of Light Sensing and Light-Harvesting Impacts the Use of Cyanobacteria as Biotechnology Platforms. Front Bioeng Biotechnol. Review. PMID: 25023122

  • Montgomery BL, Oh S, Karakkat B (2014) Molecular Basis and Fitness Implications of the Interplay Between Light and the Regulation of Iron Homeostasis in Photosynthetic Organisms. Environmental and Experimental Botany, 10.1016/j.envexpbot.2014.06.018. Abstract

  • Oh S, Montgomery, BL (2014) Phytochrome-Dependent Coordinate Control of Distinct Aspects of Nuclear and Plastid Gene Expression During Anterograde Signalling and Photomorphogenesis. Frontiers in Plant Science, 5:171. Abstract.

  • Oh S, Warnasooriya SN, Montgomery BL (2014) Mesophyll-Localized Phytochromes Gate Stress- and Light-Inducible Anthocyanin Accumulation in Arabidopsis thaliana. Plant Signaling & Behavior, 9: e28013-1–e28013-9. Abstract. 

  • Pan R, Jones AG, Hu J (2014) Cardiolipin-mediated mitochondrial dynamics and stress response in Arabidopsis. Plant Cell doi: 10.1105/tpc.113.121095. Abstract.

  • Pan R, Kaur N, and Hu J (2014) The Arabidopsis mitochondrial membrane-bound deubiquitinase UBP27 contributes to mitochondrial morphogenesis. Plant J. 78: 1047-1059.

  • Panchy N, Wu G, Newton L, Tsai CH, Chen J, Benning C, Farre EM, Shiu SH (2014) Prevalence, Evolution and cis-Regulation of Diel Transcription of Chlamydomonas reinhardtii. G3 (Bethesda). PMID: 25354782. 

  • Pattanaik B, Busch AUW, Hu P, Chen J, Montgomery BL (2014) Responses to Iron Limitation are Impacted by Light Quality and Regulated by RcaE in the Chromatically Acclimating Cyanobacterium Fremyella diplosiphon. Microbiology, 160(5): 992–1005. (Featured as Editor’s Choice). Abstract.

  • Riley R, Salamov AA, Brown DW, Nagy LG, Floudas D, Held BW, Levasseur A, Lombard V, Morin E, Otillar R, Lindquist EA, Sun H, LaButti KM, Schmutz J, Jabbour D, Luo H, Baker SE, Pisabarro AG, Walton JD, Blanchette RA, Henrissat B, Martin F, Cullen D, Hibbett DS, Grigoriev IV (2014) Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi. Proc Natl Acad Sci U S A. PMID: 24958869

  • Sgambelluri RM, Epis S, Sassera D, Luo H, Angelos ER, Walton JD (2014) Profiling of Amatoxins and Phallotoxins in the Genus Lepiota by Liquid Chromatography Combined with UV Absorbance and Mass Spectrometry. Toxins (Basel). 6(8):2336-47.

  • Singh SP, Montgomery BL (2014) Morphogenes bolA and mreB Mediate the Photoregulation of Cellular Morphology During Complementary Chromatic Acclimation in Fremyella diplosiphon, Molecular Microbiology, 93(1): 167–182. Abstract.

  • Stefano G, Hawes C, Brandizzi F (2014) ER - the key to the highway. Curr Opin Plant Biol. PMID: 25259957. Abstract. 

  • Stefano G, Renna L, Brandizzi F (2014) BiFC for Protein-Protein Interactions and Protein Topology: Discussing an Integrative Approach for an Old Technique. Methods Mol Biol. PMID: 25408453. Abstract.

  • Tsai CH, Warakanont J, Takeuchi T, Sears B, Moellering E, Benning C (2014) The protein Compromised Hydrolysis of Triacylglycerols 7 (CHT7) acts as a repressor of cellular quiescence in Chlamydomonas. PNAS. In press.

  • Wawrousek K, Noble S, Korlach J, Chen J, Eckert C, Yu J, Maness PC (2014) Genome Annotation Provides Insight into Carbon Monoxide and Hydrogen Metabolism in Rubrivivax gelatinosus. PLoS One. PMID: 25479613. Abstract

  • Ye Z, Zheng Y, Li B, Borrusch MS, Storms R, Walton JD (2014) Enchancement of Synthetic Trichoderma-Based Enzyme Mixtures for Biomass Conversion with an Alternative Family 5 Glycosyl Hydrolase from Sporotrichum thermophile.

  • Yin X, Liu X, Chen J, Kramer DM (2014) Multi-leaf Alignment from Fluorescence Plant Images. IEEE Winter Conference on Applications of Computer Vision (WACV’14). Steamboat Springs, CO, Mar. 2014. Best student paper.