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Sarathi Weraduwage

Research Assistant Professor

Sharkey Lab member

Research: Isoprene signaling pathway and its role in plant physiology

Isoprene a volatile hydrocarbon produced in large amounts by some plants, but not all plants. Isoprene is synthesized by the methylerythritol 4-phosphate (MEP) pathway and the conversion of dimethylallyl diphosphate to isoprene is catalyzed by isoprene synthase (ISPS). Isoprene enhances plant resilience to heat and oxidative stress, and herbivory, but the exact mechanism of action of isoprene is not fully understood. Isoprene emission is affected by environmental factors such as light, temperature and CO2; isoprene emission increases with high temperature and decreases with increasing CO2. Using Arabidopsis (a non-emitter in nature) transformed with a Eucalyptus globulus ISPS, we found that the regulatory mechanisms of photosynthesis and isoprene emission were similar to native emitters indicating that the regulation of isoprene emission is not specific to isoprene emitting species. Isoprene had a marked positive effect on growth in Arabidopsis. We also found that isoprene could alter expression of genes belonging to signaling networks of specific growth regulators that promotes growth or defense, and genes that are important for stress tolerance (Figure 1). Our data reveled that isoprene probably executes its effects on growth and stress tolerance through direct effects on gene expression and support a novel role for isoprene as a signaling molecule. We are currently investigating the sequence of isoprene mediated signaling pathways in plants, and whether engineering non-native emitters to produce isoprene would enhance their growth and resilience to stress.

Figure of isoprene signaling model
Figure 1. Proposed model for how isoprene signaling can affect gibberellic acid-mediated growth and jasmonic acid-mediated defense responses.

As a member of the Department of Energy, Plant Research Laboratory (DOE-PRL), I also study the relationship between photosynthesis and plant growth specifically in the model plant Arabidopsis. In order to understand the relationship between photosynthesis and plant growth and the molecular mechanisms that alter this relationship, we developed the Arabidopsis Leaf Area Growth Model to model the flow of storage C and photosynthetic C from seed germination to leaf senescence while simulating the use of assimilated C in respiratory processes and the partitioning of the remaining C to leaf area growth and leaf thickening, root growth, and inflorescence growth. By investigating growth, C assimilation and partitioning in five sets of Arabidopsis mutant lines we found that although photosynthesis provides C for growth, changes in leaf architecture (thickness, area, mesophyll cell density) brought about by small changes in partitioning of assimilated C to leaf area growth and thickening, is sufficient to enhance overall plant growth. We showed that pectin methylation by pectin methyltranferases (CGR2 and CGR3) directly affects this relationship between photosynthesis and plant growth by altering the degree cell expansion and/or adhesion thereby driving C partitioning by generating C demands for leaf area growth and leaf thickening. Given that optimization of leaf architecture is a necessity to maximize light interception, gas exchange properties and photosynthesis, I am interested in understanding molecular mechanisms and genes that affect cell wall properties and leaf architecture as a means to improve photosynthesis. So far we have shown that xyloglucan endotransglucosylase/hydrolase and pectin methyl transferase/pectin methylesterase/ pectin methylesterase inhibitor systems are key downstream execution points of leaf architectural changes common to different upstream molecular systems such as the salicylic, jasmonic and gibberellic acid signaling pathways.

Figure of C flow
Figure 2. The underlying scheme of C flow represented in the Arabidopsis Leaf Area Growth Model

Besides research, I serve as the representative of the PRL to the College of Natural Science Diversity Equity and Inclusion Advisory Committee (DEIAC). The PRL strives to achieve a “welcoming, nourishing and inclusive atmosphere that encourages creative exploration, collaboration, and scientific excellence” – The PRL Code of Ethics. By listening to ideas, suggestions and proposals from both the DEIAC and the PRL community, my role is to create a framework that will enhance effective communication amongst PRL members as well as enhance accessibility to information and resources to achieve the goals set forth by the PRL and the DEIAC. I also love teaching and mentoring. I taught PLB 416 - Plant Physiology Laboratory Course (2016) and served as a teaching assistant and guest lecturer for BMB 401 – Biochemistry (2017, 2018). I also participated as a mentor in the MSU Great Lakes Bioenergy Research Center Summer Undergraduate Research Program (2019) and the Plant Genomics at MSU - Research Experience for Undergraduates Program (2015, 2016). I also volunteer for outreach programs such as the MSU Fascination of Plants Day (2017, 2018).


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  • PhD 2013, Department of Plant Agriculture, University of Guelph, Guelph, ON. Canada
  • BSc 2002, Special Degree in Botany, University of Colombo, Colombo, Sri Lanka



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